Classes for Storing and Manipulating Taxonomic Data
Convert a taxa object to a data.frame
Convert to a taxon vector
Check that order is ascending
Taxon class
dplyr select_helpers
Database list
Valid taxonomy databases
Defines valid taxonomic databases
Removes taxa from the taxonomy of a classification that are not used b...
Returns the index of the first occurrence of each unique element
Returns the index of the first occurrence of each unique taxon in a ta...
dplyr select_helpers
dplyr select_helpers
Default font
Font for NAs in print methods
Punctuation formatting in print methods
Font for secondary data
Taxon name formatting in print methods
magrittr forward-pipe operator
Value matching for taxa package
Fill in NA values in sequence
Interleaves two vectors
Get internodes
Check if is a classification
Check if taxa are internodes
Check if taxa are leaves
Test if taxa are roots
Check if taxa are stems
Check if something is a taxon object
Check if is a taxon_authority
Check if something is a taxon_db
Check if something is a taxon_id object
Check if something is a taxon_rank
Check if is a taxon id
Check if something is a taxonomy
Check regex validity
Get leaves
Print a subset of a character vector
dplyr select_helpers
Number of leaves per taxon
Number of subtaxa per taxon
Number of supertaxa per taxon
Minimal classfication constructor
Minimal taxon constructor
Minimal taxon_authority constructor
Minimal taxon_db constructor
Minimal taxon_db_def constructor
Minimal taxon_id constructor
Minimal taxon_rank constructor
Minimal taxon_rank_level constructor
Minimal taxonomy constructor
dplyr select_helpers
dplyr select_helpers
Print that works with color
Prepare classification for printing
Prepare taxon for printing
Prepare taxon_authority for printing
Prepare taxon_id for printing
Prepare taxon_rank for printing
Prepare taxon_rank_level for printing
Prepare taxonomy for printing
Get font color for levels
All known taxonomic ranks
Get root taxa
dplyr select_helpers
Get stems
Get subtaxa
Get supertaxa
Set and get taxon authorities
Set and get taxon authors
Set and get taxon authority citations
Set and get taxon authority dates
Set and get taxon ID databases
Set and get taxon IDs
Set and get taxon names
Set and get taxon ranks
taxa casting functions
taxa coercion functions
taxa comparison functions
taxa printing functions
Taxon class
Taxon authority class
Taxon database class
Taxon ID class
Taxon rank class
Taxonomy class
Taxon class
Taxon authority class
Taxon database class
Taxon database definition class
Taxon ID class
Taxon rank class
Taxon rank level
Taxonomy class
Remove names from fields in a vctrs rcrd
Provides classes for storing and manipulating taxonomic data. Most of the classes can be treated like base R vectors (e.g. can be used in tables as columns and can be named). Vectorized classes can store taxon names and authorities, taxon IDs from databases, taxon ranks, and other types of information. More complex classes are provided to store taxonomic trees and user-defined data associated with them.
Useful links