Taxonomic Information from Around the Web
Resolve names using Global Names Recognition and Discovery.
Get HTTP status codes
Retrieve synonyms from various sources given input taxonomic names or ...
Aggregate species data to given taxonomic rank
Get taxonomic names for a given rank
Get rank for a given taxonomic name.
Capitalize the first letter of a character string.
Get citations and licenses for data sources used in taxize
Replacement function for ldply that should be faster in all cases.
taxize options
TNRS sources
Phylotastic Taxonomic Name Resolution Service.
Resolve names using Open Tree of Life (OTL) resolver
Return all accepted names for a taxon name with a given id.
Return all accepted names for a taxon name with a given id.
Return all synonyms for a taxon name with a given id.
Return all distribution records for for a taxon name with a given id.
Return all distribution records for for a taxon name with a given id.
Return all reference records for for a taxon name with a given id.
Return all reference records for for a taxon name with a given id.
Search Tropicos by scientific name, common name, or Tropicos ID.
Return summary data a taxon name with a given id.
Return all synonyms for a taxon name with a given id.
Get The Plant List families.
Get The Plant List csv files.
A light wrapper around the taxonstand fxn to call Theplantlist.org dat...
This function will return ClassificationBankIDs (hierarchiesIDs) that ...
uBio classification
Search uBio by namebank ID.
uBio ping
This function will return NameBankIDs that match given search terms
Search uBio for taxonomic synonyms by hierarchiesID.
Retrieve the upstream taxa for a given taxon name or ID.
use eol
Parse scientific names using Global Names Parser
Search for taxonomic name details using the Global Names Index
Parse scientific names using EOL's name parser.
Get references related to a ITIS TSN.
Retrieve immediate children taxa for a given taxon name or ID.
Convert a list of classifications to a tree.
Retrieve the taxonomic hierarchy for a given taxon ID.
COL defunct functions
EUBON capabilities
Lookup in the APGIII taxonomy and replace family names
Get APG names
Barcode of Life taxonomic children
Retrieve all taxa names downstream in hierarchy for BOLD
Search Barcode of Life for taxonomic IDs
Get scientific names from common names.
Retrieve the downstream taxa for a given taxon name or ID.
Given the identifier for a data object, return all metadata about the ...
Retrieve the taxonomic hierarchy from given EOL taxonID.
Search for presence of taxonomic names in EOL invasive species databas...
Search for pages in EOL database using a taxonconceptID.
Search for terms in EOL database.
EUBON children
EUBON hierarchy
EUBON taxonomy search
DEFUNCT
Index Fungorum
Function to get API key.
Check invasive species status for a set of species from GISD database
Retrieve all taxonomic names downstream in hierarchy for GBIF
Lookup details for specific names in all taxonomies in GBIF.
Parse taxon names using the GBIF name parser.
Get NCBI taxonomy UID from GenBankID
Get the BOLD (Barcode of Life) code for a search term.
Get the EOL ID from Encyclopedia of Life from taxonomic names.
Get the GBIF backbone taxon ID from taxonomic names.
Retrieve gene sequences from NCBI by accession number.
Retrieve gene sequences from NCBI by accession number.
Details on get_*() functions
Retrieve taxonomic identifiers for a given taxon name.
Get a IUCN Redlist taxon
Get NatureServe taxonomic ID for a taxon name
Get the UK National Biodiversity Network ID from taxonomic names.
Get Kew's Plants of the World code for a taxon
Retrieve gene sequences from NCBI by accession number.
Get the OTT id for a search term
Get the NameID codes from Tropicos for taxonomic names.
Get the TSN code for a search term.
Get the uBio id for a search term
Get the UID codes from NCBI for taxonomic names.
Get the page name for a Wiki taxon
Get Worms ID for a taxon name
Search for taxonomic names using the Global Names Index
Global Names Resolver Data Sources
Resolve names using Global Names Resolver
Taxonomic IDs to taxonomic names
ION - Index to Organism Names
iPlant name resolution
Search for names in the International Plant Names Index (IPNI).
Retrieve accepted TSN and name
Retrieve all taxa names or TSNs downstream in hierarchy from given TSN...
Get full ITIS record for one or more ITIS TSN's or lsid's.
ITIS hierarchy
Get kingdom names
Get TSN from LSID
Get taxonomic names for a given taxonomic name query.
Get jurisdiction data, i.e., native or not native in a region.
Retrieve taxonomic rank name from given TSN.
Get ITIS terms, i.e., tsn's, authors, common names, and scientific nam...
Get any matching IUCN species names
Get an ID for a IUCN listed taxon
Extractor functions for iucn-class.
DEFUNCT
Get a summary from the IUCN Red List
Helpers to set up authentication for the different providers.
Print a subset of a character vector
Retrieve the lowest common taxon and rank for a given taxon name or ID
Get a random vector of species names.
Search UK National Biodiversity Network database for taxonomic classif...
Search UK National Biodiversity Network
Return all synonyms for a taxon name with a given id from NBN
Search NCBI for children of a taxon
Search for taxonomy data from Plantminer.com
Retrieve all taxa names downstream in hierarchy for NCBI
NCBI taxon information from uids
Retrieve gene sequences from NCBI by accession number.
Retrieve gene sequences from NCBI by taxon name and gene names.
Search for gene sequences available for taxa from NCBI.
Get family names to make Phylomatic input object, and output input str...
Query Phylomatic for a phylogenetic tree.
Ping an API used in taxize to see if it's working.
Lookup taxa in Kew's Plants of the World
Search Kew's Plants of the World
Lookup synonyms in Kew's Plants of the World
methods for preparing/printing info for prompts for get_* functions
Aggregate data by given taxonomic rank
Resolve names from different data sources
Get common names from scientific names.
taxize authentication
Defunct functions in taxize
Taxonomic Information from Around the Web
taxize parameters
Keep track of queries in get_* functions
Last taxon state object from a get_* function call
Search the CANADENSYS Vascan API.
Retrieve all taxa names downstream in hierarchy for WORMS
Interacts with a suite of web 'APIs' for taxonomic tasks, such as getting database specific taxonomic identifiers, verifying species names, getting taxonomic hierarchies, fetching downstream and upstream taxonomic names, getting taxonomic synonyms, converting scientific to common names and vice versa, and more.
Useful links