toxpiR1.3.1 package

Create ToxPi Prioritization Models

boxLegendGrob

Create a filled-box legend

pieGridGrob

Make grid of pieGrobs

pieGrob

Create a pie grob

toxpiR-datasets

toxpiR data objects

toxpiR-package

toxpiR: Create ToxPi Prioritization Models

txpCalculateScores

Calculate ToxPi Scores for the given model and input data

txpExportGui

Export comma-separated file intended for ToxPi GUI

txpGenerics

toxpiR package generics

txpImportGui

Import data file generated by ToxPi GUI

TxpModel-class

ToxPi Model

TxpModelList-class

List of TxpModel objects

TxpResult-class

ToxPi Result

TxpResult-plot

Plot TxpResult objects

TxpResultList-class

List of TxpResult objects

TxpResultParam-class

ToxPi Result Parameters

TxpSlice-class

ToxPi Slice

TxpSliceList-class

List of TxpSlice objects

TxpTransFunc-class

Numeric transformation function

TxpTransFuncList-class

List of TxpTransFunc objects

Download source packageRead PDF manual

Enables users to build 'ToxPi' prioritization models and provides functionality within the grid framework for plotting ToxPi graphs. 'toxpiR' allows for more customization than the 'ToxPi GUI' (<https://toxpi.github.io/>) and integration into existing workflows for greater ease-of-use, reproducibility, and transparency. toxpiR package behaves nearly identically to the GUI; the package documentation includes notes about all differences. The vignettes download example files from <https://github.com/ToxPi/ToxPi-example-files>.

  • Maintainer: Jonathon F Fleming
  • License: GPL (>= 3)
  • Last published: 2025-12-16

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