tractor.base3.4.2 package

Read, Manipulate and Visualise Magnetic Resonance Images

allEqual

Test whether all elements of a vector are equal

asMriImage

Creating MriImage objects from data

colourScales

Obtaining colour scales

deduplicate

Concatenate and deduplicate vectors

DicomMetadata-class

The DicomMetadata class

embrace

Combine similar strings into one

emptyMatrix

The empty matrix

equivalent

Test two numeric vectors for equivalence

execute

Find or run an external executable file

files

Working with MRI images stored in various formats

implode

Create a character string by concatenating the elements of a vector

index

Indexing methods

indexList

Extract one or more elements from a list

infix

Resolve a variable to a default when NULL

lambda

Shorthand anonymous functions

mergeMriImages

Merging MriImage objects

MriImage-class

The MriImage class

neighbourhoodInfo

Image neighbourhoods

newSparseArrayWithData

Create a SparseArray object

nilObject

The nil object

paths

Functions for file name and path manipulation

pluralise

Number agreement with a vector

printLabelledValues

Pretty print labelled information

promote

Promote a vector to a single-column or single-row matrix

readDicomDirectory

Read a directory of DICOM files

readDicomFile

Read a DICOM file into a DicomMetadata object

SerialisableObject-class

The SerialisableObject class

serialisation

Reference object serialisation and deserialisation

sortDicomDirectories

Sort a directory of DICOM files into series

SparseArray-class

The SparseArray class

threadSafeTempFile

Obtain thread-safe temporary file names

TractorObject-class

The TractorObject class

vector

Miscellaneous vector functions

viewer

A simple interactive viewer for MriImage objects

visualisation

Visualise MriImage objects

where

Compact conditional values

Functions for working with magnetic resonance images. Reading and writing of popular file formats (DICOM, Analyze, NIfTI-1, NIfTI-2, MGH); interactive and non-interactive visualisation; flexible image manipulation; metadata and sparse image handling.

  • Maintainer: Jon Clayden
  • License: GPL-2
  • Last published: 2024-02-27