transplantr0.2.0 package

Audit and Research Functions for Transplantation

bar_score

BAR (Balance of Risk) score in liver transplantation

bilirubin_to_SI

Bilirubin unit converter (mg/dl -> µmol/l)

bilirubin_to_US

Bilirubin unit converter (µmol/l -> mg/dl)

bun_to_urea

Convert BUN to urea

apri

AST to Platelet Ratio (APRI)

ukkrri

UK Kidney Recipient Risk Index (NHSBT, 2019 version)

chi2dob

Convert CHI number to date of birth

ckd_epi

eGFR by CKD-EPI equation

ckd_epi_US

eGFR by CKD-EPI equation (US units)

cockcroft

Creatinine clearance by Cockcroft-Gault equation

cockcroft_US

Creatinine clearance by Cockcroft-Gault equation (US units)

creatinine_to_SI

Creatinine unit converter (mg/dl -> µmol/l)

creatinine_to_US

Creatinine unit converter (µmol/l -> mg/dl)

epts

Estimated Post-Transplant Survival Score (EPTS)

epts_lookup

EPTS lookup function

et_dri

Eurotransplant Donor Risk Index in Liver Transplantation (ET-DRI)

hla_mm_level

HLA mismatch level

hla_mm_level_str

HLA mismatch level from string

ibw

Ideal body weight

kdpi

US KDPI

kdpi_lookup

US KDPI lookup function

kdpi_US

US KDPI (US units)

liver_dri

Liver Donor Risk Index (DRI)

mdrd

eGFR by abbreviated MDRD equation

mdrd_US

eGFR by abbreviated MDRD equation (US units)

meld

MELD score

meld_na

MELD-Na score

meld_na_US

MELD-Na score (US units)

meld_US

MELD score (US units)

nankivell

eGFR using Nankivell formula

nankivell_spk

eGFR using the Nankivell-SPK formula

nankivell_spk_US

eGFR using the Nankivell-SPK formula (US units)

nankivell_US

eGFR using Nankivell formula (US units)

p_pass

P-PASS pre-procurement pancreas suitability score

p_soft

P-SOFT Score

p_soft_US

P-SOFT Score (US units)

pdri

Pancreas donor risk index

pedi_soft

Pedi-SOFT Score

peld

PELD score

peld_US

PELD score (US units)

raw_epts

Estimated Post-Transplant Survival Score (EPTS)

schwartz

eGFR by bedside Schwartz formula

schwartz_US

eGFR by bedside Schwartz formula (US units)

soft

SOFT score (Survival Outcomes Following Liver Transplantation)

soft_US

SOFT score (Survival Outcomes Following Liver Transplantation) (US uni...

soft2

SOFT score from P-SOFT

soft2_US

SOFT score from P-SOFT (US units)

ukeld

UKELD score

ukeld_US

UKELD score (US units)

ukkdri

UK Kidney Donor Risk Index (NHSBT, 2019 version)

ukkdri_q

UK Kidney Donor Risk Index Quartile (2019)

ukkrri_q

UK Kidney Recipient Risk Index Quartile (2019)

urea_to_bun

Convert urea to BUN

uskdri

US Kidney Donor Risk Index

uskdri_US

US Kidney Donor Risk Index (US units)

walser

eGFR using the Walser formula

walser_US

eGFR using the Walser formula (US units)

watson_ukkdri

UK Kidney Donor Risk Index (2012 version)

A set of vectorised functions to calculate medical equations used in transplantation, focused mainly on transplantation of abdominal organs. These functions include donor and recipient risk indices as used by NHS Blood & Transplant, OPTN/UNOS and Eurotransplant, tools for quantifying HLA mismatches, functions for calculating estimated glomerular filtration rate (eGFR), a function to calculate the APRI (AST to platelet ratio) score used in initial screening of suitability to receive a transplant from a hepatitis C seropositive donor and some biochemical unit converter functions. All functions are designed to work with either US or international units. References for the equations are provided in the vignettes and function documentation.

  • Maintainer: John Asher
  • License: GPL-3
  • Last published: 2020-02-28