Discovery, Access and Manipulation of 'TreeBASE' Phylogenies
A function to cache the phylogenies in treebase locally
clean the fish.base data into pure ASCII
Download the metadata on treebase using the OAI-MPH interface
remove non-ASCII characters
drop errors from the search
Search the dryad metadata archive
imports phylogenetic trees from treebase. internal function
return the trees in treebase that correspond to the search results get...
return the study.id from the search results.
Simple function to identify which trees have branch lengths
Internal function for OAI-MPH interface to the Dryad database
Search the OAI-PMH metadata by date, publisher, or identifier
Search the PhyloWS metadata
A function to pull in the phyologeny/phylogenies matching a search que...
Get the metadata associated with the study in which the phylogeny was ...
Interface to the API for 'TreeBASE' <http://treebase.org> from 'R.' 'TreeBASE' is a repository of user-submitted phylogenetic trees (of species, population, or genes) and the data used to create them.
Useful links