1d:T6bb,# Combine tree (or set of trees) and data.frame into a single treedata.table object This function takes as input a tree of class `phylo` or `multiPhylo` and a `data.frame` and combines them into a treedata.table. If a `multiPhylo` is provided, all trees must have the same tip.labels. `treedata.table` object is sorted such that the rows in the data.table are matched to the tip.labels of the phylogeny. Tip.labels on the tree must match a column of tip names in the input data.frame. The output of this function will be a treedata.table, which can be manipulated as a data.table. ```r as.treedata.table(tree, data, name_column = "detect") ``` ## Arguments - `tree`: A tree of class `phylo` or multiple trees of class `multiPhylo` - `data`: A dataset in format `data.frame` - `name_column`: A character indicating the name of taxa in `data.frame`. If set to `detect` (default) `as treedata.table` will auto-detect this column ## Returns An object of type `treedata.table` containing the tree and data.table ## Examples ```r data(anolis) anolis2 <- anolis$phy anolis2$tip.label[1] <- "NAA" anolis1 <- anolis$phy anolis1$tip.label[1] <- "NAA" trees <- list(anolis1, anolis2) class(trees) <- "multiPhylo" treesFM <- list(anolis$phy, anolis$phy) class(treesFM) <- "multiPhylo" # A phylo object that fully matches the data td <- as.treedata.table(tree = anolis$phy, data = anolis$dat) # A multiphylo object that fully matches the data td <- as.treedata.table(tree = treesFM, data = anolis$dat) # A phylo object that partially matches the data td <- as.treedata.table(tree = anolis1, data = anolis$dat) # A multiphylo object that partially matches the data td <- as.treedata.table(tree = trees, data = anolis$dat) ```1e:T49a,M7.49933 0.25C3.49635 0.25 0.25 3.49593 0.25 7.50024C0.25 10.703 2.32715 13.4206 5.2081 14.3797C5.57084 14.446 5.70302 14.2222 5.70302 14.0299C5.70302 13.8576 5.69679 13.4019 5.69323 12.797C3.67661 13.235 3.25112 11.825 3.25112 11.825C2.92132 10.9874 2.44599 10.7644 2.44599 10.7644C1.78773 10.3149 2.49584 10

as.treedata.table function