vDiveR2.1.0 package

Visualization of Viral Protein Sequence Diversity Dynamics

concat_conserved_kmer

k-mer sequences concatenation

extract_from_GISAID

Extract metadata via fasta file from GISAID

extract_from_NCBI

Extract metadata via fasta file from ncbi

json2csv

JSON2CSV

match_region_to_target

Map data region to ggplot2 region

metadata_extraction

Metadata Extraction from NCBI/GISAID (EpiFlu/EpiCoV/EpiPox/EpiArbo) FA...

plot_conservation_level

Conservation Levels Distribution Plot

plot_correlation

Entropy and total variant incidence correlation plot

plot_dynamics_protein

Dynamics of Diversity Motifs (Protein) Plot

plot_dynamics_proteome

Dynamics of Diversity Motifs (Proteome) Plot

plot_entropy

Entropy plot

plot_time

Time Distribution of Sequences Plot

plot_world_map

Geographical Distribution of Sequences Plot

vDiveR-package

vDiveR: Visualization of Viral Protein Sequence Diversity Dynamics

Download source packageRead PDF manual

To ease the visualization of outputs from Diversity Motif Analyser ('DiMA'; <https://github.com/BVU-BILSAB/DiMA>). 'vDiveR' allows visualization of the diversity motifs (index and its variants – major, minor and unique) for elucidation of the underlying inherent dynamics. Please refer <https://vdiver-manual.readthedocs.io/en/latest/> for more information.

  • Maintainer: Pendy Tok
  • License: MIT + file LICENSE
  • Last published: 2025-09-19