Vaccine Coverage and Outbreak Risk Analysis
Plot the Risk Curve of Expected Infections
Calculate the probability of a major outbreak
Calculate the probability of at least one secondary infection
Summarize Vaccination Coverage for a Given Year
Calculate the expected number of infections in a cohort
Calculate the effective reproduction number (Re)
Plot Historical Vaccination Coverage Rate
Plot Outbreak Probability vs. Coverage
Generate an Outbreak Risk Simulation Table
Provides tools to analyze vaccine coverage data and simulate potential disease outbreak scenarios. It allows users to calculate key epidemiological metrics such as the effective reproduction number (Re), outbreak probabilities, and expected infection counts based on county-level vaccination rates, disease characteristics, and vaccine effectiveness. The package includes historical kindergarten vaccination data for Florida counties and offers functions for generating summary tables, visualizations, and exporting the underlying plot data.