Rapid Manipulation of the Variant Call Format (VCF)
Subset a vcftable object
Compare two VCF/BCF files reporting various statistics
read a INFO tag in the VCF/BCF into R data structure
Make sensible and beautiful plots based on various objects in vcfppR
count the heterozygous sites per sample in the VCF/BCF
vcfppR: Rapid Manipulation of the Variant Call Format (VCF)
API for manipulating the VCF/BCF.
summarize the various variant types at both variant level and sample l...
read VCF/BCF contents into R data structure
API for writing the VCF/BCF.
The 'vcfpp.h' (<https://github.com/Zilong-Li/vcfpp>) provides an easy-to-use 'C++' 'API' of 'htslib', offering full functionality for manipulating Variant Call Format (VCF) files. The 'vcfppR' package serves as the R bindings of the 'vcfpp.h' library, enabling rapid processing of both compressed and uncompressed VCF files. Explore a range of powerful features for efficient VCF data manipulation.