A Modular Platform for Reproducible Modeling of Species Niches and Distributions
clearAll
Create a Wallace module
ecoClimate_getdata
ecoClimate_select
ecospat.plot.nicheDEV
envs_ecoClimate Obtain ecoClimate variables
envs_userEnvs
envs_worldclim Obtain WorldClim variables
espace_nicheOv Niche Overlap
Occurrence density grid
espace_pca Principal component analysis
fmtSpN
getRasterVals
hlSpp
model_bioclim Generate Bioclim model
model_maxent Generate maxent.jar or maxnet model
mxNonzeroCoefs
occs_queryDb Query online database for species occurrence records.
occs_userOccs Loads user provided occurrence records
part_partitionOccs Partition occurrence data
penvs_bgExtent Generate background extent
penvs_bgMask Mask environmental data
penvs_bgSample Sample background points
penvs_drawBgExtent: Draw background extent
penvs_userBgExtent: user provided background extent
poccs_removeByID Remove occurrence by ID
poccs_selectOccs Remove occurrences outside of polygon
poocs_thinOccs Thin occurrences
polyZoom
popUpContent
predictMaxnet
printVecAsis
Register a Wallace module
remEnvsValsNA
reverseLabel
Run Wallace Application
smartProgress
spName
Spurious package call to avoid note of functions outside R folder
vis_bioclimPlot Visualize bivariate plot of BIOCLIM model
Wallace: A modular platform for reproducible ecological modeling
write_csv_robust
writeLog
xfer_area Transfer model to a new area
xfer_draw Draw extent of transfer
xfer_mess generate MESS map for transferred raster
xfer_time Transfer model to a new time
xfer_userEnvs Transfer model to user specified area and time
xfer_userExtent: user provided extent of transfer
zoom2Occs
The 'shiny' application Wallace is a modular platform for reproducible modeling of species niches and distributions. Wallace guides users through a complete analysis, from the acquisition of species occurrence and environmental data to visualizing model predictions on an interactive map, thus bundling complex workflows into a single, streamlined interface. An extensive vignette, which guides users through most package functionality can be found on the package's GitHub Pages website: <https://wallaceecomod.github.io/wallace/articles/tutorial-v2.html>.
Useful links