webchem1.3.0 package

Chemical Information from the Web

as.cas

Format numbers as CAS numbers

bcpc_query

Query https://pesticidecompendium.bcpc.org

chebi_comp_entity

Retrieve Complete Entity from ChEBI

chembl_atc_classes

Retrieve all ATC classes

chembl_query

Query ChEMBL using ChEMBL IDs

chembl_resources

List ChEMBL Resources

cir_img

Query Chemical Identifier Resolver Images

cir_query

Query Chemical Identifier Resolver

cs_check_key

Retrieve ChemSpider API key

cs_compinfo

Retrieve record details by ChemSpider ID

cs_control

Control ChemSpider API requests

cs_convert

Convert identifiers using ChemSpider

cs_datasources

Retrieve ChemSpider data sources

cs_extcompinfo

Get extended record details by ChemSpider ID

cs_img

Download images from ChemSpider

cts_compinfo

Get record details from Chemical Translation Service (CTS)

cts_convert

Convert Ids using Chemical Translation Service (CTS)

cts_from

Return a list of all possible ids

cts_to

Return a list of all possible ids

etox_basic

Get basic information from a ETOX ID

etox_targets

Get Quality Targets from a ETOX ID

etox_tests

Get Tests from a ETOX ID

extractors

Extract parts from webchem objects

find_db

Check data source coverage of compounds

fn_percept

Retrieve flavor percepts from www.flavornet.org

get_chebiid

Retrieve Lite Entity (identifiers) from ChEBI

get_cid

Retrieve Pubchem Compound ID (CID)

get_csid

ChemSpider ID from compound name, formula, SMILES, InChI or InChIKey

get_etoxid

Get ETOX ID

get_wdid

Get Wikidata Item ID

is.cas

Check if input is a valid CAS

is.inchikey

Check if input is a valid inchikey

is.inchikey_cs

Check if input is a valid inchikey using ChemSpider API

is.inchikey_format

Check if input is a valid inchikey using format

is.smiles

Check if input is a SMILES string

nist_ri

Retrieve retention indices from NIST

opsin_query

OPSIN web interface

parse_mol

Parse Molfile (as returned by ChemSpider) into a R-object.

pc_prop

Retrieve compound properties from a pubchem CID

pc_sect

Retrieve data from PubChem content pages

pc_synonyms

Search synonyms in pubchem

ping_service

Ping an API used in webchem to see if it's working.

srs_query

Get record details from U.S. EPA Substance Registry Servives (SRS)

wd_ident

Retrieve identifiers from Wikidata

webchem-defunct

Defunct function(s) in the webchem package

webchem-deprecated

Deprecated function(s) in the webchem package

webchem

webchem: An R package to retrieve chemical information from the web.

with_cts

Auto-translate identifiers and search databases

write_mol

Export a Chemical Structure in .mol Format.

Chemical information from around the web. This package interacts with a suite of web services for chemical information. Sources include: Alan Wood's Compendium of Pesticide Common Names, Chemical Identifier Resolver, ChEBI, Chemical Translation Service, ChemSpider, ETOX, Flavornet, NIST Chemistry WebBook, OPSIN, PubChem, SRS, Wikidata.

  • Maintainer: Tamás Stirling
  • License: MIT + file LICENSE
  • Last published: 2023-06-09