wilson2.4.2 package

Web-Based Interactive Omics Visualization

markerUI

marker module UI representation

geneView

geneView's module server logic

geneViewGuide

geneView module guide

geneViewUI

geneView's module UI representation

global_cor_heatmap

global correlation heatmap module server logic

global_cor_heatmap_guide

global correlation heatmap module guide

global_cor_heatmapUI

global correlation heatmap module UI representation

heatmap

heatmap module server logic

heatmapGuide

heatmap module guide

heatmapUI

heatmap module UI representation

install_app

Download and install Wilson Apps

label

label module server logic

labelUI

label module UI representation

limit

limit module server logic

limitUI

limit module UI representation

log_message

logger message convenience function

marker

marker module server logic

and

AND module server logic

andUI

AND module UI representation

categoricalPalettes

Function to generate categorical (qualitative) color palettes

Clarion

Clarion R6-class definition

colorPicker

colorPicker module server logic

colorPickerUI

colorPicker module UI representation

columnSelector

columnSelector module server logic

columnSelectorUI

columnSelector module UI representation

create_geneview

Method for geneView creation

create_heatmap

Method for heatmap creation

create_pca

Method for pca creation.

create_scatterplot

Method for scatter plot creation

divergingPalettes

Function to generate diverging (two-sided) color palettes (e.g. for lo...

download

Function used for downloading. Creates a zip container containing plot...

equalize

Method to get equalized min/max values from vector

featureSelector

featureSelector module server logic

featureSelectorGuide

featureSelector module guide

featureSelectorUI

featureSelector module UI representation

forceArgs

Force evaluation of the parent function's arguments.

orNumeric

orNumeric module server logic

orNumericUI

orNumeric module UI representation

orTextual

orTextual module server logic

orTextualUI

orTextual module UI representation

parse_MaxQuant

Converting MaxQuant Output file proteinGroups.txt to CLARION format by...

parser

Method to parse input file.

pca

pca module server logic

pcaGuide

pca module guide

pcaUI

pca module UI representation

release_questions

Defines additional questions asked before CRAN submission. DO NOT EXPO...

scatterPlot

scatterPlot module server logic

scatterPlotGuide

scatterPlot module guide

scatterPlotUI

scatterPlot module UI representation

searchData

Function to search data for selection

sequentialPalettes

Function to generate sequential (one-sided) color palettes (e.g. for e...

set_logger

set a log4r logger used within the package

tobias_parser

TOBIAS TFBS table to clarion parser

transformation

transformation module server logic

transformationUI

transformation module UI representation

Tool-set of modules for creating web-based applications that use plot based strategies to visualize and analyze multi-omics data. This package utilizes the 'shiny' and 'plotly' frameworks to provide a user friendly dashboard for interactive plotting.

  • Maintainer: Hendrik Schultheis
  • License: MIT + file LICENSE
  • Last published: 2021-04-19