Tools for Analyzing Crossover Interference
Estimate chiasma distribution from crossover counts
Estimate coincidence function
Convert format of crossover locations data
Estimate number of crossovers
Distance between crossovers given there are two
Estimate the coincidence function
Estimate the coincidence as a function of micron distance
Estimate recombination rate
Estimate crossover locations
Location of first crossover given there are two
Distance to a crossover
Fit Gamma model
Fit Stahl model
Coincidence function for the gamma model
Estimate intensity function
Distance between crossovers
Crossover locations given there are two
estimate Ripley's K function
Location of crossover given there is one
Convert recrate to scanone format
Simulate crossover locations under the Stahl model
Coincidence function for the Stahl model
Calculate log likelihood for Stahl model
Installed version of R/xoi
Distribution of number of crossovers
Analysis of crossover interference in experimental crosses, particularly regarding the gamma model. See, for example, Broman and Weber (2000) <doi:10.1086/302923>.