xpose.xtras0.0.2 package

Extra Functionality for the 'xpose' Package

add_prm_association

Describe parameter associations

add_relationship

Add relationship(s) to an xpose_set

add_xpdb

Add one or more xpdb objects to an xpose_set

backfill_iofv

Add individual objective function to data

catdv_vs_dvprobs

Non-simulation based likelihood model diagnostic

check_levels

Verify validity of level list

check_xpose_set

Check an xpose_set object

convenience

Convenience functions used in package

desc_from_comments

Backfill utility for descriptions

diagram_lineage

Visualize xpose_set

diff.xpose_set

Display deltaOFV values across xpose_set

duplicated.xpose_set

Check if any xpose_data objects are repeated in xpose_set

edit_xpose_data

Master xpdb editing function

eta_vs_catcov

Eta categorical covariate plots (typical)

eta_vs_contcov

Eta continuous covariate plots (typical)

expose_param

Expose a model parameter of xpdb objects in an xpose_set

expose_property

Expose a property of xpdb objects in an xpose_set

fill_prob_subprob_method

Place .problem, .subprob and .method into environment consistently

filter.xpose_set

Filtration method for xpose_set

focus_xpdb

Focus on an xpdb object in an xpose_set

franken_prop

Combine a property from all components of a franken_xpdb

franken_xpdb

Combine several xpose_data objects into one

get_prm

Access model parameters

get_prop

Generic function to extract a property from a model summary

get_set_index

Get full index for xpose_data data

get_shk

Get shrinkage estimates from model summary

grab_xpose_plot

Grab processed xpose_plot

grapes-p-grapes

Binary check if LHS is parent of LHS

grid_plots

Grid plots

iofv_vs_mod

Objective function changes across models

irep

Add simulation counter

is_xp_xtras

Basic class checker for xp_xtras

levelers

Level-defining helper functions

list_dv_probs

For a categorical DV variable, show associated probabilities

list_vars

Updates to list_vars

modavg_plots

Model average plots

modavg_xpdb

Create a model-averaged xpose data object

modify_xpdb

Add, remove or rename variables in an xpdb

mutate_prm

Transform parameter values in place

mutate.xpose_set

Mutation method for xpose_set

param_selector

Select parameter row number

pipe

Pipe operator

pred_vs_pred

Compare model predictions

proc_levels

Convert levels list into tibble

pull.xpose_set

Pulling method for xpose_set

reexports

Objects exported from other packages

rename.xpose_set

Renaming method for xpose_set

reportable_digits

Reportable digits for model fit

reshape_set

Convert xpose_set to a nested list.

select_subset

Convenience wrapper for tidyselect

select.xpose_set

Selection method for xpose_set

set_base_model

Base model for xpose_set

set_dv_probs

Set probability columns for categorical endpoints

set_option

Set an xpose option

set_prop

Set a summary property

set_var_levels

Set variable levels

set_var_types_x

Set variable types

set_var_types.default

Set variable types

set_var_types

Set variable types

set_var_types.xp_xtra

Set variable types

shark_colors

Change colors of shark plots

shark_plot

Individual contributions to dOFV

summarise_xpdb

Group/ungroup and summarize variables in an xpdb

two_set_dots

Typical processing for plots of 2 sets

val2lvl

Translate values to levels

waterfalls

Specific waterfall plots

wrap_xp_ggally

Ensure consistent style with GGally functions

xp_var

xp_var Method

xp_xtra_theme

Extra theme defaults

xp_xtras

Convert an object to an xpose_data and xp_xtras object

xp4_xtra_theme

Updated version of the xpose4 theme

xplot_boxplot

Default xpose boxplot function

xplot_pairs

Wrapper around ggpairs

xpose_set

Generate a set of xpdb objects

xpose.xtras-package

xpose.xtras: Extra Functionality for the 'xpose' Package

xset_lineage

Determine lineage within a set

xset_waterfall

Waterfall plot

Adding some at-present missing functionality, or functions unlikely to be added to the base 'xpose' package. This includes some diagnostic plots that have been missing in translation from 'xpose4', but also some useful features that truly extend the capabilities of what can be done with 'xpose'. These extensions include the concept of a set of 'xpose' objects, and diagnostics for likelihood-based models.

  • Maintainer: John Prybylski
  • License: MIT + file LICENSE
  • Last published: 2024-11-21