kegg.pathways dataset

• Maintainer: Barbara Tarantino
• License: GPL-3
• Last published: 2025-12-17

Column names and types (First 10)

• mRNA surveillance pathway:igraph
• Protein processing in endoplasmic reticulum:igraph
• SNARE interactions in vesicular transport:igraph
• Sulfur relay system:igraph
• RNA degradation:igraph
• Homologous recombination:igraph
• Fanconi anemia pathway:igraph
• Viral life cycle - HIV-1:igraph
• MAPK signaling pathway:igraph
• ErbB signaling pathway:igraph
• Ras signaling pathway:igraph
• Rap1 signaling pathway:igraph
• Wnt signaling pathway:igraph
• Notch signaling pathway:igraph
• Hedgehog signaling pathway:igraph
• TGF-beta signaling pathway:igraph
• Hippo signaling pathway:igraph
• Hippo signaling pathway - multiple species:igraph
• VEGF signaling pathway:igraph
• Apelin signaling pathway:igraph
• JAK-STAT signaling pathway:igraph
• NF-kappa B signaling pathway:igraph
• TNF signaling pathway:igraph
• HIF-1 signaling pathway:igraph
• FoxO signaling pathway:igraph
• Calcium signaling pathway:igraph
• Phospholipase D signaling pathway:igraph
• Sphingolipid signaling pathway:igraph
• cAMP signaling pathway:igraph
• cGMP-PKG signaling pathway:igraph
• PI3K-Akt signaling pathway:igraph
• AMPK signaling pathway:igraph
• mTOR signaling pathway:igraph
• Neuroactive ligand-receptor interaction:igraph
• Hormone signaling:igraph
• Cytokine-cytokine receptor interaction:igraph
• Viral protein interaction with cytokine and cytokine receptor:igraph
• ECM-receptor interaction:igraph
• Cell adhesion molecules:igraph
• Endocytosis:igraph
• Phagosome:igraph
• Peroxisome:igraph
• Autophagy - animal:igraph
• Autophagy - other:igraph
• Mitophagy - animal:igraph
• Efferocytosis:igraph
• Cell cycle:igraph
• Oocyte meiosis:igraph
• Apoptosis:igraph
• Apoptosis - multiple species:igraph
• Ferroptosis:igraph
• Necroptosis:igraph
• p53 signaling pathway:igraph
• Cellular senescence:igraph
• Focal adhesion:igraph
• Adherens junction:igraph
• Tight junction:igraph
• Gap junction:igraph
• Signaling pathways regulating pluripotency of stem cells:igraph
• Regulation of actin cytoskeleton:igraph
• Complement and coagulation cascades:igraph
• Platelet activation:igraph
• Neutrophil extracellular trap formation:igraph
• Toll-like receptor signaling pathway:igraph
• NOD-like receptor signaling pathway:igraph
• RIG-I-like receptor signaling pathway:igraph
• Cytosolic DNA-sensing pathway:igraph
• C-type lectin receptor signaling pathway:igraph
• Natural killer cell mediated cytotoxicity:igraph
• Antigen processing and presentation:igraph
• T cell receptor signaling pathway:igraph
• Th1 and Th2 cell differentiation:igraph
• Th17 cell differentiation:igraph
• IL-17 signaling pathway:igraph
• B cell receptor signaling pathway:igraph
• Fc epsilon RI signaling pathway:igraph
• Fc gamma R-mediated phagocytosis:igraph
• Leukocyte transendothelial migration:igraph
• Intestinal immune network for IgA production:igraph
• Chemokine signaling pathway:igraph
• Insulin secretion:igraph
• Insulin signaling pathway:igraph
• Glucagon signaling pathway:igraph
• Regulation of lipolysis in adipocytes:igraph
• Adipocytokine signaling pathway:igraph
• PPAR signaling pathway:igraph
• GnRH secretion:igraph
• GnRH signaling pathway:igraph
• Ovarian steroidogenesis:igraph
• Estrogen signaling pathway:igraph
• Progesterone-mediated oocyte maturation:igraph
• Prolactin signaling pathway:igraph
• Oxytocin signaling pathway:igraph
• Relaxin signaling pathway:igraph
• Growth hormone synthesis, secretion and action:igraph
• Thyroid hormone synthesis:igraph
• Thyroid hormone signaling pathway:igraph
• Parathyroid hormone synthesis, secretion and action:igraph
• Melanogenesis:igraph
• Renin secretion:igraph
• Aldosterone synthesis and secretion:igraph
• Cortisol synthesis and secretion:igraph
• Cardiac muscle contraction:igraph
• Adrenergic signaling in cardiomyocytes:igraph
• Vascular smooth muscle contraction:igraph
• Salivary secretion:igraph
• Gastric acid secretion:igraph
• Pancreatic secretion:igraph
• Bile secretion:igraph
• Carbohydrate digestion and absorption:igraph
• Cholesterol metabolism:igraph
• Vitamin digestion and absorption:igraph
• Cobalamin transport and metabolism:igraph
• Mineral absorption:igraph
• Vasopressin-regulated water reabsorption:igraph
• Aldosterone-regulated sodium reabsorption:igraph
• Endocrine and other factor-regulated calcium reabsorption:igraph
• Glutamatergic synapse:igraph
• GABAergic synapse:igraph
• Cholinergic synapse:igraph
• Dopaminergic synapse:igraph
• Serotonergic synapse:igraph
• Long-term potentiation:igraph
• Long-term depression:igraph
• Retrograde endocannabinoid signaling:igraph
• Synaptic vesicle cycle:igraph
• Neurotrophin signaling pathway:igraph
• Phototransduction:igraph
• Olfactory transduction:igraph
• Taste transduction:igraph
• Inflammatory mediator regulation of TRP channels:igraph
• Axon guidance:igraph
• Osteoclast differentiation:igraph
• Longevity regulating pathway:igraph
• Longevity regulating pathway - multiple species:igraph
• Circadian rhythm:igraph
• Circadian entrainment:igraph
• Thermogenesis:igraph
• Pathways in cancer:igraph
• Transcriptional misregulation in cancer:igraph
• MicroRNAs in cancer:igraph
• Proteoglycans in cancer:igraph
• Chemical carcinogenesis - receptor activation:igraph
• Viral carcinogenesis:igraph
• Central carbon metabolism in cancer:igraph
• Choline metabolism in cancer:igraph
• PD-L1 expression and PD-1 checkpoint pathway in cancer:igraph
• Colorectal cancer:igraph
• Pancreatic cancer:igraph
• Hepatocellular carcinoma:igraph
• Gastric cancer:igraph
• Glioma:igraph
• Thyroid cancer:igraph
• Acute myeloid leukemia:igraph
• Chronic myeloid leukemia:igraph
• Basal cell carcinoma:igraph
• Melanoma:igraph
• Renal cell carcinoma:igraph
• Bladder cancer:igraph
• Prostate cancer:igraph
• Endometrial cancer:igraph
• Breast cancer:igraph
• Small cell lung cancer:igraph
• Non-small cell lung cancer:igraph
• Human T-cell leukemia virus 1 infection:igraph
• Human immunodeficiency virus 1 infection:igraph
• Hepatitis B:igraph
• Hepatitis C:igraph
• Coronavirus disease - COVID-19:igraph
• Influenza A:igraph
• Measles:igraph
• Herpes simplex virus 1 infection:igraph
• Human cytomegalovirus infection:igraph
• Kaposi sarcoma-associated herpesvirus infection:igraph
• Epstein-Barr virus infection:igraph
• Human papillomavirus infection:igraph
• Vibrio cholerae infection:igraph
• Epithelial cell signaling in Helicobacter pylori infection:igraph
• Pathogenic Escherichia coli infection:igraph
• Salmonella infection:igraph
• Shigellosis:igraph
• Yersinia infection:igraph
• Pertussis:igraph
• Legionellosis:igraph
• Staphylococcus aureus infection:igraph
• Tuberculosis:igraph
• Bacterial invasion of epithelial cells:igraph
• Amoebiasis:igraph
• Malaria:igraph
• Toxoplasmosis:igraph
• Leishmaniasis:igraph
• Chagas disease:igraph
• African trypanosomiasis:igraph
• Asthma:igraph
• Systemic lupus erythematosus:igraph
• Rheumatoid arthritis:igraph
• Autoimmune thyroid disease:igraph
• Inflammatory bowel disease:igraph
• Allograft rejection:igraph
• Graft-versus-host disease:igraph
• Alzheimer disease:igraph
• Parkinson disease:igraph
• Amyotrophic lateral sclerosis:igraph
• Huntington disease:igraph
• Spinocerebellar ataxia:igraph
• Prion disease:igraph
• Pathways of neurodegeneration - multiple diseases:igraph
• Cocaine addiction:igraph
• Amphetamine addiction:igraph
• Morphine addiction:igraph
• Alcoholism:igraph
• Lipid and atherosclerosis:igraph
• Fluid shear stress and atherosclerosis:igraph
• Hypertrophic cardiomyopathy:igraph
• Arrhythmogenic right ventricular cardiomyopathy:igraph
• Dilated cardiomyopathy:igraph
• Diabetic cardiomyopathy:igraph
• Viral myocarditis:igraph
• Type II diabetes mellitus:igraph
• Type I diabetes mellitus:igraph
• Maturity onset diabetes of the young:igraph
• Alcoholic liver disease:igraph
• Non-alcoholic fatty liver disease:igraph
• Insulin resistance:igraph
• AGE-RAGE signaling pathway in diabetic complications:igraph
• Cushing syndrome:igraph
• EGFR tyrosine kinase inhibitor resistance:igraph
• Platinum drug resistance:igraph
• Antifolate resistance:igraph
• Endocrine resistance:igraph
• Steroid biosynthesis:igraph