calculateSCUO function

calculates the synonymous codon usage order (SCUO)

calculateSCUO calulates the SCUO value for each gene in genome. Note that if a codon is absent, this will be treated as NA and will be skipped in final calculation

calculateSCUO(genome)

Arguments

• genome: A genome object initialized with initializeGenomeObject.

Returns

returns the SCUO value for each gene in genome

Examples

genome_file <- system.file("extdata", "genome.fasta", package = "AnaCoDa")
 
## reading genome
genome <- initializeGenomeObject(file = genome_file)
scuo <- calculateSCUO(genome)