getCodonCounts function

Get Codon Counts For all Amino Acids

provides the codon counts for a fiven amino acid across all genes

getCodonCounts(genome)

Arguments

• genome: A genome object from which the counts of each codon can be obtained.

Returns

Returns a data.frame storing the codon counts for each amino acid.

Details

The returned matrix containes a row for each gene and a column for each synonymous codon of aa.

Examples

genome_file <- system.file("extdata", "genome.fasta", package = "AnaCoDa")
 
## reading genome
genome <- initializeGenomeObject(file = genome_file)
counts <- getCodonCounts(genome)