getCodonCountsForAA function

Get Codon Counts For a specific Amino Acid

provides the codon counts for a fiven amino acid across all genes

getCodonCountsForAA(aa, genome)

Arguments

• aa: One letter code of the amino acid for which the codon counts should be returned
• genome: A genome object from which the counts of each codon can be obtained.

Returns

Returns a data.frame storing the codon counts for the specified amino acid.

Details

The returned matrix containes a row for each gene and a coloumn for each synonymous codon of aa.

Examples

genome_file <- system.file("extdata", "genome.fasta", package = "AnaCoDa")
 
## reading genome
genome <- initializeGenomeObject(file = genome_file)
counts <- getCodonCountsForAA("A", genome)