getNcAA function

Calculate the Effective Number of Codons for each Amino Acid

getNcAA returns the Effective Number of Codons for each Amino Acid.

getNcAA(genome)

Arguments

• genome: A genome object initialized with initializeGenomeObject.

Returns

Returns an object of type data.frame with the Effective Number of Codons for each amino acid in each gene.

Examples

genome_file <- system.file("extdata", "more_genes.fasta", package = "AnaCoDa")
## reading genome
genome <- initializeGenomeObject(file = genome_file)

nc <- getNcAA(genome)