plotAcceptanceRatios function

Plot Acceptance ratios

Plots acceptance ratios for codon-specific parameters. Will be by amino acid for ROC and FONSE models, but will be by codon for PA and PANSE models. Note assumes estimating parameters for all codons.

plotAcceptanceRatios(trace, main = "CSP Acceptance Ratio Traces")

Arguments

• trace: An Rcpp trace object initialized with initializeTraceObject.
• main: The title of the plot.

Returns

This function has no return value.