writeParameterObject function

Write Parameter Object to a File

writeParameterObject will write the parameter object as binary to the filesystem

writeParameterObject(parameter, file)

Arguments

• parameter: parameter on object created by initializeParameterObject.
• file: A filename that where the data will be stored.

Returns

This function has no return value.

Details

As Rcpp object are not serializable with the default R save function, therefore this custom save function is provided (see loadParameterObject ).

Examples

## Not run:

genome_file <- system.file("extdata", "genome.fasta", package = "AnaCoDa")

genome <- initializeGenomeObject(file = genome_file)
sphi_init <- c(1,1)
numMixtures <- 2
geneAssignment <- c(rep(1,floor(length(genome)/2)),rep(2,ceiling(length(genome)/2)))
parameter <- initializeParameterObject(genome = genome, sphi = sphi_init, 
                                       num.mixtures = numMixtures, 
                                       gene.assignment = geneAssignment, 
                                       mixture.definition = "allUnique")

## writing an empty parameter object as the runMCMC routine was not called yet
writeParameterObject(parameter = parameter, file = file.path(tempdir(), "file.Rda"))
## End(Not run)