Tools for Accessing the Botanical Information and Ecology Network Database
Extract a list of all species in the BIEN database.
Extract species list by country
Extract a species list by county.
Extract a list of species within a given sf polygon.
Extract a species list by state/province
Generate citations for data extracted from BIEN.
Download data dictionaries
Download the current BIEN database version and release date
List political divisions and associated geonames codes.
Check for differing records between old and new dataframes.
Extract species occurrence records by a latitude/longitude bounding bo...
Extract species occurrence records by country.
Extract species occurrence records by county.
Extract species occurrences by family.
Extract occurrence data from BIEN for specified genera
Count the number of (geoValid) occurrence records for each species in ...
Extract occurrence data for specified sf polygon
Extract occurrence data for specified species from BIEN
Extract species occurrence records by state.
Download the complete BIEN phylogenies
Download the conservative BIEN phylogeny
Label nodes on a phylogeny
Download plot data from specified countries.
Download plot data by dataset.
Download plot data from a given datasource.
List available datasources.
List available sampling protocols.
Download plot metadata
Download plot data by plot name.
Download plot data using a specified sampling protocol.
Download plot data from specified sf object.
Download plot data from specified states/provinces.
Download range maps that intersect a specified bounding box.
Download range maps for given genus.
Download range maps that intersect the range of a given species.
List available range maps
Load range maps for specified species.
Download range maps that intersect a user-supplied sf object.
Extract range data and convert to smaller "skinny" format
Build a richness raster from a skinny range file
Extract range data for large numbers of species
Download range maps for given species.
Extract stem data for a given datasource from BIEN
Extract stem data for specified families from BIEN
Extract stem data for specified genera from BIEN
Download stem data using a specified sampling protocol.
Extract stem data for specified species from BIEN
Extract taxonomic information for families
Extract taxonomic information for genera
Extract taxonomic information for species
Download trait data for given country.
Download trait data for given families.
Download trait data for given genera.
List all available types of trait data
Calculates species mean values for a given trait, using Genus or Famil...
Download trait data for given species.
Download all measurements of a specific trait(s).
Download trait data for given families and traits.
Download trait data for given genus/genera and trait(s).
Download trait data for given species and trait.
Count the number of trait observations for each species in the BIEN da...
BIEN: Tools for accessing the BIEN database.
Run an SQL query on the BIEN database.
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Check that value is character
Check that value is logical or null
Check that value is logical
Check that value is numeric
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Provides Tools for Accessing the Botanical Information and Ecology Network Database. The BIEN database contains cleaned and standardized botanical data including occurrence, trait, plot and taxonomic data (See <https://bien.nceas.ucsb.edu/bien/> for more Information). This package provides functions that query the BIEN database by constructing and executing optimized SQL queries.