BIEN_phylogeny_complete function

Download the complete BIEN phylogenies

BIEN_phylogeny_complete downloads a specified number of the BIEN phylogeny replicates.

BIEN_phylogeny_complete(n_phylogenies = 1, seed = NULL, replicates = NULL, ...)

Arguments

• n_phylogenies: The number of phylogenies to download. Should be an integer between 1 and 100. Default is 1.
• seed: Argument passed to set.seed. Useful for replicating work with random phylogeny sets.
• replicates: The specific replicated phylogenies to return. Should be a numeric vector of integers between 1 and 100.
• ...: Additional arguments passed to internal functions.

Returns

A phylo or multiphylo object containing the specified phylogenies

Note

Information on the construction of the BIEN phylogenies is available online at https://bien.nceas.ucsb.edu/bien/biendata/bien-2/phylogeny/

Examples

## Not run:

phylos<-BIEN_phylogeny_complete(n_phylogenies = 10,seed = 1)
phylos<-BIEN_phylogeny_complete(replicates = c(1,2,99,100))
## End(Not run)

See Also

Other phylogeny functions: BIEN_phylogeny_conservative(), BIEN_phylogeny_label_nodes()