Retrieve, Transform and Analyze the Barcode of Life Data Systems Data
Helper Functions for fetching data
Helper Functions: Retrieve the data using POST API and convert it into...
Define and select column presets from the BCDM data
Helper functions for generating a diversity profile
Helper functions for bold.public.search
Transform and align the sequence data retrieved from BOLD
Create a biodiversity profile of the retrieved data
Visualize BIN occurrence data on maps
Analyze and visualize the multiple sequence alignment
Helper functions for creating different data summaries
Set the BOLD private data API key
Generate specific summaries from the downloaded BCDM data
Export files generated by BOLDconnectR
Filters for specific parameters to customize the search for private da...
Retrieve data from the BOLD database
Retrieve metadata of the BOLD data fields
Search user based (private) and publicly available data on the BOLD da...
Search publicly available data on the BOLD database
Create a community matrix based on BINs abundances/incidences
Helper functions for sequence based data
global variables
Facilitates retrieval, transformation and analysis of the data from the Barcode of Life Data Systems (BOLD) database <https://boldsystems.org/>. This package allows both public and private user data to be easily downloaded into the R environment using a variety of inputs such as: IDs (processid, sampleid), BINs, dataset codes, project codes, taxonomy, geography etc. It provides frictionless data conversion into formats compatible with other R-packages and third-party tools, as well as functions for sequence alignment & clustering, biodiversity analysis and spatial mapping.