BRugs0.9-2.1 package

Interface to the 'OpenBUGS' MCMC Software

model.iteration

Returns number of iterations

model.names

Get variable names in model

model.precision

Setting precision for prec figures

model.RN

State of Random Number Generator

model.save.state

Save the model's current state

model.setAP

Changing settings of updating algorithms

model.setWD

Set working directory

model.update

Updating the model

plot.autoC

Plot autocorrelation function for a scalar variable

plot.bgr

Plot the Gelman-Rubin convergence statistic for a scalar variable

plot.density

Plot density estimate or histogram of a scalar variable

plot.history

Trace of a scalar variable

ranks

Calculation of ranks

rats

ratsdata example

bgr.point

Internal functions (to support plotting the Gelman-Rubin convergence s...

BRugs

Introduction to BRugs

BRugsFit

BRugs' meta function

buffer

Reading OpenBUGS buffer file

bugs.data

Writing input for OpenBUGS

bugs.inits

Writing input for OpenBUGS

buildMCMC

Generating mcmc.list objects for package coda

dic

DIC

dimensions

Dimension of BUGS variables

get.chain

Current chain to be initialized

get.num.chains

Number of chains

help.WinBUGS

WinBUGS documentation

info.memory

Show memory usage

info.modules

Loaded modules

info.node

Node information

info.updaters

Information on MCMC updaters

model.adaptivePhase

Getting length of adaptive phase

model.check

Checking the model file

model.compile

Compiling the model

model.data

Loading the data

model.factory

Enable and disable factories to create updaters

model.gen.inits

Generating initial values

model.inits

Loading initial values

samples.autoC

Plot autocorrelation function

samples.bgr

Plot the Gelman-Rubin convergence statistic

samples.clear

Clear recorded values

samples.coda

Writing files in CODA format

samples.correl

Correlation

samples.density

Plot density estimate or histogram

samples.get

Get settings used for calculations

samples.history

Trace of a variable

samples.monitors

Names of monitored scalar variables

samples.sample

Stored values

samples.set

Start recording

samples.setting

Change settings used for calculations

samples.size

Size of the stored sample

samples.stats

Calculate summary statistics

set.values

Setting current values

summary

Summary of MCMC simulation

write.datafile

Write data for OpenBUGS - intended for internal use only

write.model

Creating an OpenBUGS model file

loadOpenBUGS

Load OpenBUGS from given directory

Fully-interactive R interface to the 'OpenBUGS' software for Bayesian analysis using MCMC sampling. Runs natively and stably in 32-bit R under Windows. Versions running on x86Linux and on 64-bit R under Windows are in "beta" status and less efficient.

  • Maintainer: Uwe Ligges
  • License: GPL-2
  • Last published: 2024-02-25