A Versatile Toolkit for Copy Number Variation Relationship Data Analysis and Visualization
Average edges of a matrix to facilitate downsampling.
Calculate the probability distribution of CNV concordance events with ...
Create a linear regression matrix.
Server component of the CNVScope plotly shiny application.
Create chromosomal interaction matrices for CNVScope shiny application...
List of Divisors
Rescale positive and negative data, preserving sign information.
Find the negative log p-value of a pair of vectors.
Form sample matrix from GDC copy number data files.
Read GDC segmentation datafile for low-pass sequencing data.
Get the genes in the genomic ranges indicated by the row and column la...
Get Block Indices from an asymmetric (or symmetric) matrix.
Calculate block averages and areas in a matrix given breakpoints.
Calculate several base statistics for color rescaling.
Create an HTML widget for use in shiny or webshot for a given pair of ...
Convert GRanges object to underscord positions.
Import a breakpoint BED file.
Gets a small piece of a matrix (top left corner) for viewing, rather t...
Postprocess linear regression matrix.
Assign GenomicInteractions to a predefined series of bins for row and ...
Runs the CNVScope plotly shiny application.
Runs the CNVScope plotly shiny application.
Rescale positive and negative data, preserving sign information.
Convert coordinates in underscored format to a GRanges object.
Write a matrix, with genes, of a submatrix of a whole genome interacti...
Write a matrix, with genes, of a submatrix of a whole genome interacti...
Provides the ability to create interaction maps, discover CNV map domains (edges), gene annotate interactions, and create interactive visualizations of these CNV interaction maps.