Congruent Rate Analyses in Birth-Death Scenarios
Create a set of congruent models
CRABS: Congruent Rate Analyses in Birth-death Scenarios
Compute likelihood
Computes the congruent class, i.e., the pulled rates.
Plots the rate functions after filtering them according to a given pen...
Global scale for GMRF using linear interpolation of pre-computed value...
Global scale for HSMRF using linear interpolation of pre-computed valu...
Create a set of congruent models
model2df
Plots the rate functions including the pulled rates.
Plots the rate functions
Print method for CRABS object
Title
Print method for CRABSset object
print.CRABSsets
read RevBayes log file
Jointly samples speciation and extinction trajectories through time, w...
Samples simple increase/decrease models through time with noise.
Stochastic exploration of congruent models for all samples in the post...
Stochastic exploration of congruent models.
Sample custom functions through time.
Summarize trends in the posterior
Summarize trends in the congruence class
Features tools for exploring congruent phylogenetic birth-death models. It can construct the pulled speciation- and net-diversification rates from a reference model. Given alternative speciation- or extinction rates, it can construct new models that are congruent with the reference model. Functionality is included to sample new rate functions, and to visualize the distribution of one congruence class. See also Louca & Pennell (2020) <doi:10.1038/s41586-020-2176-1>.