FinalPreprocessing function

Final Preprocessing

This function generates the final filtered normalized dataset.

FinalPreprocessing(
  object,
  GeneFlitering = "NoiseF",
  export = FALSE,
  quiet = FALSE,
  fileName = "filteredDataset"
)

## S4 method for signature 'DISCBIO'
FinalPreprocessing(
  object,
  GeneFlitering = "NoiseF",
  export = FALSE,
  quiet = FALSE,
  fileName = "filteredDataset"
)

Arguments

• object: DISCBIO class object.
• GeneFlitering: GeneFlitering has to be one of the followings: ["NoiseF","ExpF"]. Default is "NoiseF"
• export: A logical vector that allows writing the final gene list in excel file. Default is TRUE.
• quiet: if TRUE, intermediary output is suppressed
• fileName: File name for exporting (if export = TRUE)

Returns

The DISCBIO-class object input with the FinalGeneList slot filled.

Examples

#sc <- DISCBIO(valuesG1msTest)
#sc <- NoiseFiltering(sc, percentile = 0.9, CV = 0.2, export = FALSE)
#sc <- FinalPreprocessing(sc, GeneFlitering = "NoiseF", export = FALSE)