DIscBIO1.2.2 package

Convert Single Cell Data Objects to DISCBIO.

Check format

Generating a class vector to be used for the decision tree analysis.

ClustDiffGenes

Clustering of single-cell transcriptome data

Plotting clusters in a heatmap representation of the cell distances

Computing tSNE

Automatic Feature Id Conversion.

Determining differentially expressed genes (DEGs) between all individu...

Determining differentially expressed genes (DEGs) between two particul...

The DISCBIO Class

Convert a DISCBIO object to a SingleCellExperiment.

Performing Model-based clustering on expression values

Final Preprocessing

Inference of outlier cells

Foldchange of twoclass unpaired sequencing data

J48 Decision Tree

Evaluating the performance of the J48 decision tree.

Jaccard’s similarity

Pseudo-time ordering based on k-means clusters

Networking analysis.

Plotting the network.

Noise Filtering

Normalizing and filtering

Plot PCA symbols

Highlighting gene expression in the t-SNE map

Plotting Gap Statistics

tSNE map with labels

Plotting pseudo-time ordering or gene expression in Model-based cluste...

Plotting the Model-based clusters in PCA.

Plotting the pseudo-time ordering in the t-SNE map

Silhouette Plot for K-means clustering

tSNE map for K-means clustering with symbols

tSNE map

Defining protein-protein interactions (PPI) over a list of genes,

Prepare Example Dataset

Pseudo-time ordering

Rank columns

Reformat Siggenes Table

Replace Decimals

Resampling

Retries a URL

RPART Decision Tree

Evaluating the performance of the RPART Decision Tree.

Significance analysis of microarrays

Estimate sequencing depths

Volcano Plot

Twoclass Wilcoxon statistics