pseudoTimeOrdering function

Pseudo-time ordering

This function takes the exact output of exprmclust function and construct Pseudo-time ordering by mapping all cells onto the path that connects cluster centers.

pseudoTimeOrdering(
  object,
  quiet = FALSE,
  export = FALSE,
  filename = "Cellular_pseudo-time_ordering"
)

## S4 method for signature 'DISCBIO'
pseudoTimeOrdering(
  object,
  quiet = FALSE,
  export = FALSE,
  filename = "Cellular_pseudo-time_ordering"
)

Arguments

• object: DISCBIO class object.
• quiet: if TRUE, suppresses intermediary output
• export: if TRUE, exports order table to csv
• filename: Name of the exported file (if export=TRUE)

Returns

The DISCBIO-class object input with the kordering slot filled.