HDSpatialScan1.0.5 package

Multivariate and Functional Spatial Scan Statistics

clusters

Creation of the matrix of potential clusters

DFFSS

DFFSS scan procedure

dfree_index_multi

Index for the MDFFSS scan procedure

dfree

Index for the UG scan procedure

FinScan

Finalization of the scan procedures

HDSpatialScan-package

Multivariate and Functional Spatial Scan Statistics

InitScan

Initalization of the scan procedures by creating the matrix of potenti...

MDFFSS

MDFFSS scan procedure

MG

MG scan procedure

MNP

MNP scan procedure

MPFSS

MPFSS scan procedure

MRBFSS

MRBFSS scan procedure

multi_fWMW

Index for the NPFSS scan procedure (multivariate functional case)

multi_gaussian

Index for the MG scan procedure

multi_signs_matrix

List of matrix of signs (multivariate functional data)

multi_WMW

Index for the MNP scan procedure

non_overlap

Return only the detected clusters with no overlapping in their order o...

NPFSS

NPFSS scan procedure (univariate functional or multivariate functional...

permutate

Permutates the data

PFSS

PFSS scan procedure

plot_map

Map of circular clusters

plot_map2

Map of the clusters

plot_schema

Schema of the clusters

plot.ResScanOutput

Schema or map of the clusters

plotCurves

Generic function to plot curves

plotCurves.ResScanOutputMultiFunct

Plots the curves in the clusters detected by the multivariate function...

plotCurves.ResScanOutputUniFunct

Plots the curves in the clusters detected by the univariate functional...

plotSummary

Generic function to plot a summary

plotSummary.ResScanOutputMulti

Plots the mean or median spider chart of the clusters detected by a mu...

plotSummary.ResScanOutputMultiFunct

Plots the mean or median curves in the clusters detected by a multivar...

plotSummary.ResScanOutputUniFunct

Plots the mean or median curves in the clusters detected by a univaria...

pointwise_dfree

Index for the DFFSS scan procedure

pointwise_wmw_multi

Index for the MRBFSS scan procedure

pointwise_wmw_uni

Index for the URBFSS scan procedure

post_filt_area

A posteriori filtering on the area

post_filt_nb_sites

A posteriori filtering on the number of sites/individuals

post_filt_radius

A posteriori filtering on the radius

print.ResScanOutput

Prints a result of a scan procedure

ResScanOutput

Constructor function for objects of the ResScanOutput class

ResScanOutputMulti

Constructor function for objects of the ResScanOutputMulti class

ResScanOutputMultiFunct

Constructor function for objects of the ResScanOutputMultiFunct class

ResScanOutputUni

Constructor function for objects of the ResScanOutputUni class

ResScanOutputUniFunct

Constructor function for objects of the ResScanOutputUniFunct class

SpatialScan

Spatial scan procedure

summary.ResScanOutputMulti

Summary of the clusters obtained with a multivariate scan function (MG...

summary.ResScanOutputMultiFunct

Summary of the clusters obtained with a multivariate functional scan f...

summary.ResScanOutputUni

Summary of the clusters obtained with a univariate scan function (UG o...

summary.ResScanOutputUniFunct

Summary of the clusters obtained with a univariate functional scan fun...

transform_data

Computation of the multivariate functional ranks

UG

UG scan procedure

uni_fWMW

Index for the NPFSS scan procedure (univariate functional case)

uni_signs_matrix

Computation of the matrix of signs

UNP

UNP scan procedure

URBFSS

URBFSS scan procedure

wmw_uni

Index for the UNP scan procedure

Allows to detect spatial clusters of abnormal values on multivariate or functional data (Frévent et al. (2022) <doi:10.32614/RJ-2022-045>). See also: Frévent et al. (2023) <doi:10.1093/jrsssc/qlad017>, Smida et al. (2022) <doi:10.1016/j.csda.2021.107378>, Frévent et al. (2021) <doi:10.1016/j.spasta.2021.100550>. Cucala et al. (2019) <doi:10.1016/j.spasta.2018.10.002>, Cucala et al. (2017) <doi:10.1016/j.spasta.2017.06.001>, Jung and Cho (2015) <doi:10.1186/s12942-015-0024-6>, Kulldorff et al. (2009) <doi:10.1186/1476-072X-8-58>.

  • Maintainer: Camille FREVENT
  • License: GPL-3
  • Last published: 2025-06-05