cubeMendelian function

Inheritance Cube: Mendelian

This function creates a Mendelian Inheritance Cube. It only handles simple, alphabetic genotypes.

The default is 3 alleles at 1 locus, this can be extended to however many alleles one is interested in, but only at 1 locus.

cubeMendelian(
  gtype = c("AA", "Aa", "aa"),
  eta = NULL,
  phi = NULL,
  omega = NULL,
  xiF = NULL,
  xiM = NULL,
  s = NULL
)

Arguments

• gtype: Vector of genotypes, with the wild-type in the first position
• eta: Genotype-specific mating fitness
• phi: Genotype-specific sex ratio at emergence
• omega: Genotype-specific multiplicative modifier of adult mortality
• xiF: Genotype-specific female pupatory success
• xiM: Genotype-specific male pupatory success
• s: Genotype-specific fractional reduction(increase) in fertility

Returns

Named list containing the inheritance cube, transition matrix, genotypes, wild-type allele, and all genotype-specific parameters.