PCGMM-class function

PCGMM Class

PCGMM Class

An object containing the estimates produced using the univariable principal components generalized method of methods (PC-GMM) method as well as various statistics. class

Slots

  • robust: Whether the robust model with overdispersion heterogeneity is estimated.
  • Exposure: The name of the exposure variable.
  • Outcome: The name of the outcome variable.
  • Correlation: The matrix of correlations between genetic variants.
  • Estimate: The causal estimate from the PC-GMM method.
  • StdError: The standard error associated with Estimate.
  • CILower: The lower bound of the confidence interval for Estimate based on StdError.
  • CIUpper: The upper bound of the confidence interval for Estimate based on StdError.
  • Fstat: The first-stage F statistic for all genetic principal components used as instruments.
  • Overdispersion: The estimate of the overdispersion parameter for the robust model.
  • PCs: The number of genetic principal components used to instrument the exposure.
  • Pvalue: P-value associated with the causal estimate.
  • Alpha: The significance level used in constructing the confidence interval (default is 0.05).
  • Heter.Stat: Heterogeneity statistic (Cochran's Q statistic) and associated p-value (for non-robust model): the null hypothesis is that all principal components estimate the same causal parameter; rejection of the null is an indication that one or more principal components may be pleiotropic.
  • Maintainer: Stephen Burgess
  • License: GPL-2 | GPL-3
  • Last published: 2024-04-12

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