Simulate Discrete Character Data along Phylogenetic Trees
Combine Two Morpho Objects
Determines the number of convergently evolved traits
Determines the route (nodes and branches) for a tip in a phylogenetic ...
Get discrete gamma rates
Get discrete log-normal rates
Add reconstructed tree and matrix to morpho object
Morpho object
Match sampled ancestor labels
Plot full evolutionary history
Plots morphological matrix
Get reconstructed matrix
Color branches for plotting a reconstructed tree
Remove morphological character data
Simulate characters along branches in a tree
Calculates statistics for a morpho object
Generate a symmetric Q matrix
Write reconstructed character matrix to file
Write reconstructed tree to file
Write the taxa ages of reconstructed tree
Write the taxa ages
Tools to simulate morphological traits along phylogenetic trees with branch lengths representing evolutionary distance or time. Includes functions for visualizing evolutionary processes along trees and within morphological character matrices.