compile_sim_cpp function

Compile ODE model to c++ function

compile_sim_cpp(
  code,
  dose_code,
  pk_code,
  size,
  p,
  cpp_show_code,
  code_init = NULL,
  state_init = NULL,
  declare_variables = NULL,
  variables = NULL,
  covariates = NULL,
  obs = NULL,
  dose = NULL,
  iov = NULL,
  compile = TRUE,
  verbose = FALSE,
  as_is = FALSE
)

Arguments

• code: C++ code ODE system
• dose_code: C++ code per dose event
• pk_code: C++ code per any event (similar to $PK)
• size: size of ODE system
• p: parameters (list)
• cpp_show_code: show output c++ function?
• code_init: code for initialization of state
• state_init: state init vector
• declare_variables: variable declaration for all required variables (including user-specified)
• variables: only the user-specified variables
• covariates: covariates specification
• obs: observation specification
• dose: dose specification
• iov: iov specification
• compile: compile or not?
• verbose: show more output
• as_is: use C-code as-is, don't substitute line-endings or shift indices

Returns

List containing ODE definition in C++ code and simulation function