featureMatrixJoint function

featureMatrixJoint

Compute the feature matrix for this joint segmentation problem.

featureMatrixJoint(profile.list)

Arguments

• profile.list: profile.list

Returns

Numeric feature matrix (samples x features).

Author(s)

Toby Dylan Hocking toby.hocking@r-project.org [aut, cre]

Examples

library(PeakSegJoint)
data(H3K36me3.TDH.other.chunk1, envir=environment())
lims <- c(43000000, 43200000) # left
some.counts <-
  subset(H3K36me3.TDH.other.chunk1$counts,
         lims[1] < chromEnd & chromStart < lims[2])
profile.list <- ProfileList(some.counts)
featureMatrixJoint(profile.list)