Joint Peak Detection in Several ChIP-Seq Samples
binSum
clusterPeaks
ConvertModelList
featureMatrixJoint
GeomTallRect
multiClusterPeaks
PeakErrorSamples
PeakSegJointError
PeakSegJointFaster
PeakSegJointFasterOne
PeakSegJointHeuristic
PeakSegJointHeuristicStep1
PeakSegJointHeuristicStep2
PeakSegJointSeveral
PoissonLoss
ProfileList
Jointly segment several ChIP-seq samples to find the peaks which are the same and different across samples. The fast approximate maximum Poisson likelihood algorithm is described in "PeakSegJoint: fast supervised peak detection via joint segmentation of multiple count data samples" <doi:10.48550/arXiv.1506.01286> by TD Hocking and G Bourque.