Identification of Prognosis-Related Mutually Exclusive Modules
Plot Kaplan-Meier survival curve.
Converts MAF file into mutation matrix.
Get candidate module.
Get final module.
Extract the local networks from the PPI network.
Draw an lollipopPlot for module genes
Extract the mutually exclusive module.
Draw a waterfall plot of mutated genes involved in the module
Exact tests to detect mutually exclusive, co-occuring and altered gene...
Get perturbed p-value.
Get univarCox result.
Calculate mutual information.
A novel tool to identify candidate driver modules for predicting the prognosis of patients by integrating exclusive coverage of mutations with clinical characteristics in cancer.