Pv3Rs1.0.0 package

Estimate the Cause of Recurrent Vivax Malaria using Genetic Data

compute_posterior

Compute posterior probabilities of P. vivax recurrence states

determine_MOIs

Determine multiplicities of infection (MOIs)

enumerate_RGs

Enumerate relationship graphs (RGs)

plot_data

Plots the data

plot_RG

Plot a relationship graph (RG)

plot_simplex

Plots a 2D simplex

project2D

Project 3D probability coordinates onto 2D simplex coordinates

Pv3Rs-package

Pv3Rs: Estimate the Cause of Recurrent Vivax Malaria using Genetic Dat...

RG_to_igraph

Converts a relationship graph (RG) encoded as a list to an igraph ob...

sample_RG

Sample a relationship graph (RG)

Download source packageRead PDF manual

Plot malaria parasite genetic data on two or more episodes. Compute per-person posterior probabilities that each Plasmodium vivax (Pv) recurrence is a recrudescence, relapse, or reinfection (3Rs) using per-person P. vivax genetic data on two or more episodes and a statistical model described in Taylor, Foo and White (2022) <doi:10.1101/2022.11.23.22282669>. Plot per-recurrence posterior probabilities.

  • Maintainer: Aimee Taylor
  • License: GPL (>= 3)
  • Last published: 2025-11-20

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