RepeatedHighDim2.4.0 package

Methods for High-Dimensional Repeated Measures Data

bag

Calculates the bag

check_limma

Check for 'limma' availability

covid_markers

COVID-19 Markers Dataset

depmed

Calculates the depth median.

fc_ci

Calculation of adjusted confidence intervals

fc_plot

Volcano plot of adjusted confidence intervals

GA_diagplot

Diagnostic plot for comparison of two correlation matrices.

gem

Plots a gemstone to an interactive graphics device

GlobTestMissing

Detection of global group effect

gridfun

Specifies grid for the calculation of the halfspace location depths

hldepth

Calculates the halfspace location depth

iter_matrix

Genetic algorithm for generating correlated binary data

loop

Calculates the fence and the loop

netRNA

netRNA:Network meta-analysis for gene expression data

RepeatedHighDim

RepeatedHighDim Package

RHighDim

Detection of global group effect

rho_bounds

Calculate lower and upper the bounds for pairwise correlations

rmvbinary_EP

Simulating correlated binary variables using the algorithm by Emrich a...

rmvbinary_QA

Simulating correlated binary variables using the algorithm by Qaqish (...

robust_covid_data

Robust COVID-19 Dataset

robust_covid_markers_02trim

Robust COVID-19 Markers (02 Trim) Dataset

robust_covid_markers_03trim

Robust COVID-19 Markers (03 Trim) Dataset

robust_covid_markers

Robust COVID-19 Markers Dataset

scTC_bpplot

scTC_bpplot: Post-trim breakpoint heatmap for scTrimClust results

scTC_eff_clr_robust

Robust COVID-19 CLR Transformation Effects (Internal)

scTC_eff_clr

COVID-19 CLR Transformation Marker Effects (Internal)

scTC_eff_log_robust

Robust COVID-19 LogNormalized Effects (Internal)

scTC_eff_log

COVID-19 LogNormalized Marker Effects (Internal)

scTC_trim_effect

scTC_trim_effect: Compare scTrimClust trimming against default Seurat ...

scTrimClust

scTrimClust: Cluster visualization with alpha hull-based outlier detec...

sequence_probs

Calculation of probabilities for binary sequences

seurat_obj

ProcessedSingle-Cell Data

start_matrix

Setup of the start matrix

summary_RHD

Summary of RHighDim function

A toolkit for the analysis of high-dimensional repeated measurements, providing functions for outlier detection, differential expression analysis, gene-set tests, and binary random data generation.