KO_gsva function

Perform Gene Set Variation Analysis

KO_gsva(
  reporter_res,
  verbose = TRUE,
  method = "wilcox.test",
  p.adjust.method = "BH",
  ...
)

Arguments

• reporter_res: reporter_res
• verbose: verbose
• method: see ko.test
• p.adjust.method: p.adjust.method
• ...: additional parameters to gsva

Returns

enrich_res

Examples

## use `gsva` from the `GSVA` package.
if (requireNamespace("GSVA")) {
  data("reporter_score_res")
  gsva_res <- KO_gsva(reporter_score_res, p.adjust.method = "none")
}

See Also

Other common_enrich: KO_enrich(), KO_fisher(), KO_gsa(), KO_gsea(), KO_padog(), KO_safe(), KO_sea(), plot_enrich_res()