ReporterScore0.1.8 package

plot the Z-score of features distribution

Update the GO2gene files (from 'GO' database)

Perform Significance Analysis of Function and Expression

Perform Simultaneous Enrichment Analysis

Test the proper clusters k for c_means

Combine the results of 'step by step GRSA'

Custom modulelist from a specific organism

Build a custom modulelist

Export report score result tables

Transfer gene symbol table to KO table

get features in a modulelist

Calculate reporter score

The GOlist used for enrichment.

The KOs abundance table and group table.

Perform enrichment analysis

Perform fisher's exact enrichment analysis

Perform gene set analysis

Perform gene set enrichment analysis

Perform Gene Set Variation Analysis

Perform Pathway Analysis with Down-weighting of Overlapping Genes (PAD...

Differential analysis or Correlation analysis for KO-abundance table

Load the CARDinfo (from CARD database)

Load the GOlist (from 'GO' database)

Load the specific table (from 'KEGG')

Modify the pathway description before plotting

Pipe operator

Plot enrich_res

Plot features boxplot

Plot features heatmap

Plot features trend in one pathway or module

Plot features network

Plot htable levels

plot_KEGG_map

Plot the reporter_res as circle_packing

Plot the reporter_res

Plot the significance of pathway

Plot c_means result

Print reporter_score

Print rs_by_cm

Transfer p-value of KOs to Z-score

One step to get the reporter score of your KO abundance table.

ReporterScore: Generalized Reporter Score-Based Enrichment Analysis fo...

Reporter score analysis after C-means clustering

Upgrade the KO level

update CARDinfo from (from 'CARD' database)

Update files from 'KEGG'