plot_enrich_res function

Plot enrich_res

Plot enrich_res

Plot enrich_res

plot_enrich_res(
  enrich_res,
  mode = 1,
  padj_threshold = 0.05,
  show_ID = FALSE,
  Pathway_description = TRUE,
  facet_level = FALSE,
  facet_anno = NULL,
  str_width = 50,
  facet_str_width = 15,
  ...
)

## S3 method for class 'enrich_res'
plot(
  x,
  mode = 1,
  padj_threshold = 0.05,
  show_ID = FALSE,
  Pathway_description = TRUE,
  facet_level = FALSE,
  facet_anno = NULL,
  str_width = 50,
  facet_str_width = 15,
  ...
)

Arguments

• enrich_res: enrich_res object
• mode: plot style: 1~2
• padj_threshold: p.adjust threshold
• show_ID: show pathway id
• Pathway_description: show KO description rather than KO id.
• facet_level: facet plot if the type is "pathway" or "module"
• facet_anno: annotation table for facet, two columns, first is level summary, second is pathway id.
• str_width: default: 50
• facet_str_width: str width for facet label
• ...: add
• x: enrich_res object

Returns

ggplot

ggplot

See Also

Other common_enrich: KO_enrich(), KO_fisher(), KO_gsa(), KO_gsea(), KO_gsva(), KO_padog(), KO_safe(), KO_sea()