c_means function

Test the proper clusters k for c_means

Test the proper clusters k for c_means

C-means cluster

cm_test_k(otu_group, filter_var, fast = TRUE)

c_means(otu_group, k_num, filter_var)

Arguments

• otu_group: standardize data
• filter_var: filter the highest var
• fast: whether do the gap_stat?
• k_num: cluster number

Returns

ggplot

ggplot

Examples

if (requireNamespace("e1071") && requireNamespace("factoextra")) {
  data(otutab, package = "pcutils")
  pcutils::hebing(otutab, metadata$Group) -> otu_group
  cm_test_k(otu_group, filter_var = 0.7)
  cm_res <- c_means(otu_group, k_num = 3, filter_var = 0.7)
  plot(cm_res, 0.8)
}

See Also

Other C_means: RSA_by_cm()