load_htable function

Load the specific table (from 'KEGG')

Load the specific table (from 'KEGG')

Load the KOlist (from 'KEGG')

Load the CPDlist (from 'KEGG')

Load the KO description (from 'KEGG')

Load the KO_htable (from 'KEGG')

Load the Pathway_htable (from 'KEGG')

Load the Module_htable (from 'KEGG')

Load the Compound_htable (from 'KEGG')

Load the pathway information for an organism (from 'KEGG')

load_htable(type, verbose = TRUE)

load_KOlist(verbose = TRUE)

load_CPDlist(verbose = TRUE)

load_KO_desc(verbose = TRUE)

load_KO_htable(verbose = TRUE)

load_Pathway_htable(verbose = TRUE)

load_Module_htable(verbose = TRUE)

load_Compound_htable(verbose = TRUE)

load_org_pathway(org = "hsa", verbose = TRUE)

Arguments

• type: "ko", "module", "pathway", "compound" ...
• verbose: logical
• org: kegg organism, listed in https://www.genome.jp/kegg/catalog/org_list.html, default, "hsa"

Returns

KO_htable

KOlist

CPDlist

KO description

KO_htable

Pathway_htable

Module_htable

Compound_htable

KOlist

Examples

Pathway_htable <- load_htable("pathway")
head(Pathway_htable)