up_level_KO function

Upgrade the KO level

up_level_KO(
  KO_abundance,
  level = "pathway",
  show_name = FALSE,
  modulelist = NULL,
  verbose = TRUE
)

Arguments

• KO_abundance: KO_abundance
• level: one of 'pathway', 'module', 'level1', 'level2', 'level3', 'module1', 'module2', 'module3'.
• show_name: logical
• modulelist: NULL or customized modulelist dataframe, must contain 'id','K_num','KOs','Description' columns. Take the KOlist as example, use custom_modulelist.
• verbose: logical

Returns

data.frame

Examples

data("KO_abundance_test")
KO_level1 <- up_level_KO(KO_abundance, level = "level1", show_name = TRUE)