gene2ko function

Transfer gene symbol table to KO table

You can use clusterProfiler::bitr() to transfer your table from other gene_id to gene_symbol.

gene2ko(genedf, org = "hsa")

Arguments

• genedf: ,rowname is gene symbol (e.g. PFKM), colnames is samples
• org: kegg organism, listed in 'https://www.genome.jp/kegg/catalog/org_list.html', default, 'hsa'

Returns

kodf

Examples

data("genedf")
KOdf <- gene2ko(genedf, org = "hsa")