plot_report_circle_packing function

Plot the reporter_res as circle_packing

plot_report_circle_packing(
  reporter_res,
  rs_threshold = 1.64,
  mode = 2,
  facet_anno = NULL,
  show_ID = FALSE,
  Pathway_description = TRUE,
  str_width = 10,
  show_level_name = "all",
  show_tip_label = TRUE
)

Arguments

• reporter_res: result of get_reporter_score
• rs_threshold: plot threshold vector, default:1.64
• mode: 1~2 plot style.
• facet_anno: annotation table for facet, more two columns, last is pathway name, last second is pathway id.
• show_ID: show pathway id
• Pathway_description: show KO description rather than KO id.
• str_width: str_width to wrap
• show_level_name: show the level name?
• show_tip_label: show the tip label?

Returns

ggplot

Examples

data("reporter_score_res")
if (requireNamespace("igraph") && requireNamespace("ggraph")) {
  plot_report_circle_packing(reporter_score_res, rs_threshold = c(2, -2), str_width = 40)
}