custom_modulelist function

Build a custom modulelist

Build a custom modulelist

Transform a modulelist to a list

custom_modulelist(pathway2ko, pathway2desc = NULL, verbose = TRUE)

transform_modulelist(mymodulelist, mode = 1)

Arguments

• pathway2ko: user input annotation of Pathway to KO mapping, a data.frame of 2 column with pathway and ko.
• pathway2desc: user input of Pathway TO Description mapping, a data.frame of 2 column with pathway and description.
• verbose: verbose
• mymodulelist: mymodulelist
• mode: 1~2

Returns

a custom modulelist

modulelist

Examples

mydat <- data.frame(pathway = paste0("PATHWAY", rep(seq_len(2), each = 5)), ko = paste0("K", 1:10))
mymodulelist <- custom_modulelist(mydat)
print(mymodulelist)
transform_modulelist(mymodulelist)

See Also

Other modulelist: custom_modulelist_from_org(), get_features()

Other modulelist: custom_modulelist_from_org(), get_features()